GEExam.DMIinjExam
GEExam.DMIinjExam(
BASE_FOLDER,
DATA_FOLDER=None,
OUTPUT_FOLDER=None,
ANATOMICAL_series=None,
)
DMI exam for an intravenous injection, splitting series into pre-/post-injection.
Attributes¶
| Name | Description |
|---|
WASHIN_series | |
injection_time | |
last_MRS | |
last_MRSI | |
normalisation_factor | |
post_MRS | |
post_MRSI | |
pre_MRS | |
pre_MRSI | |
washin | |
Methods¶
| Name | Description |
|---|
| load_all_series | Load all series and split MRS/MRSI series into pre- and post-injection groups. |
| plot_MRS_over_time | Plot phased MRS spectra from all series over time relative to injection. |
load_all_series¶
GEExam.DMIinjExam.load_all_series(overwrite=False)
Load all series and split MRS/MRSI series into pre- and post-injection groups.
Parameters¶
| Name | Type | Description | Default |
|---|
| overwrite | bool | If True, reload series that are already loaded, by default False. | False |
plot_MRS_over_time¶
GEExam.DMIinjExam.plot_MRS_over_time(phase_params=None, plot_params=None)
Plot phased MRS spectra from all series over time relative to injection.
Parameters¶
| Name | Type | Description | Default |
|---|
| phase_params | dict | Keyword arguments passed to each series’ phase_avg_spec. | None |
| plot_params | dict | Keyword arguments passed to plot_spectra_over_time. | None |